| 09:15 | Opening |
| Session Chair: Petra Haenel, Bielefeld | |
| 09:30 | Robert Giegerich Algebraic Dynamic Programming |
| 10:25 | Constantin Bannert, Bielefeld Evaluation of the Jumping Alignment algorithm with random and biological data |
| 11:00 | Coffee Break |
| 11:30 | Michael Sammeth, Bielefeld QAlign: a Graphical Framework for Multiple Sequence Analysis |
| 12:05 | Leila Taher, Bielefeld Integration of Comparative and Intrinsic Gene Prediction Approaches using Support Vector Machines |
| 12:25 | Thomas Schmidt, Bielefeld Algorithms for High-Level Genome Comparison |
| 12:45 | Lunch |
| Session Chair: Mathias Katzer, Bielefeld | |
| 14:15 | Margus Lukk, Helsinki Exploring metastatic melanoma using micorarray expression data |
| 14:50 | Ilana Saarikko, Helsinki General Optimisation Approach For Normalising cDNA Microarray Data |
| 15:10 | Bjarte Dysvik, Bergen J-Express Pro - A portable software package for the analysis and visualization of microarray data |
| 15:30 | Coffee Break |
| 16:00 | Thomas Schlitt, EBI From gene networks to gene function |
| Session Chair: Alice McHardy, Bielefeld | |
| 16:35 | Dion Whitehead, Bielefeld Trawling for enviromentally specific genes by combinatorial genomics |
| 16:55 | Teemu Kivioja, Helsinki Promoter Analysis of UPR Regulated Genes |
| 17:15 | Coffee Break |
| 17:45 | Janne Nikkilä, Helsinki Preliminary genewise regression model for transcriptional regulation of the yeast genes |
| 18:05 | Ming Chen, Bielefeld Reconstruction of Metabolic Pathways via a Web-Based Biological Information Retrieval System |
| 18:25 | Finish |
| Session Chair: Frank Zöllner, Bielefeld | |
| 09:15 | Sebastian Böcker, Bielefeld Mass Spectrometry in Genomics |
| Marc Rehmsmeier, Bielefeld Score Models for Database Searching |
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| 10:10 | Katja Saarela, Helsinki Reaction distance metrics |
| 10:45 | Coffee Break |
| 11:15 | Thomas Huber, Bielefeld Influence of cations on the secondary structure in cyclic peptides |
| 11:50 | Eckhard Guthöhrlein,
Bielefeld Simulation of Protein-Ligand Interactions by Docking Techniques and Molecular Dynamics |
| 12:10 | Björn Voß, Bielefeld Evaluating the Predictability of Conformational Switches in RNA |
| 12:30 | Lunch |
| Session Chair: Carsten Meyer, Bielefeld | |
| 14:00 | Klaus Prank, Bielefeld Mathematical modelling and simulation of gene regulatory signalling |
| 14:55 | Victor Kunin, EBI Reconstruction of gene content of ancestral species |
| 15:30 | Coffee Break |
| 16:00 | Juan Carlos
Borrás, Helsinki Microaneurysms Detection in Retinal Images using Support Vector Machines |
| Session Chair: Thomas Töller, Bielefeld | |
| 16:35 | Evimaria Terzi, Helsinki Segmentation Similarity Measures for Biological Applications |
| 16:55 | Michael Lappe, EBI Completeness in Functional Genomics |
| 17:15 | Coffee Break |
| 17:45 | Merja Oja, Helsinki Human endogenous retroviruses: Review and research problems |
| 18:20 | Finish |
| Session Chair: Mohamed Abouelhoda, Bielefeld | |
| 09:30 | Jens Stoye, Bielefeld Suffix trees, affix trees, and some of their applications |
| 10:25 | Michael Beckstette, Bielefeld Efficient Matching of Position Specific Scoring Matrices on Genomic Scale Data using Extended Suffix Arrays |
| 10:45 | Coffee Break |
| 11:15 | Ketil Malde, Bergen Sequence Clustering with Suffix Arrays |
| 11:50 | Kim Roland Rasmussen,
Bielefeld Sequence Search and Alignment with Indexing and Filtering (SWIFT) |
| 12:25 | Lunch |
| Session Chair: Jomuna Choudhuri, Bielefeld | |
| 13:55 | Klaus-Bernd Schürmann, Bielefeld Efficient Suffix Tree Construction and Storage with Memory Limitations in Bioinformatics Applications |
| 14:30 | Esa Pitkänen, Helsinki Reconstruction of metabolic networks |
| 14:50 | Kimmo Palin, Helsinki Comparing two models for gene regulation |
| 15:10 | Coffee Break |
| 15:40 | Final Remarks |
| 16:00 | Finish |