Modultitel

• Interdisziplinäre ZellVisualisierung

Lehrveranstaltungen des Moduls

• Interdisziplinäre ZellVisualisierung (SS: 2V)
• Projekt CELLmicrocosmos Cell Modeling (4Pj)
• Seminar Cell Visualization (SS: 2S) oder
• Seminar Stereoscopic 3D Visualization (WS: 2S)

Modulverantwortliche(r)

• M.A./B.Sc. Björn Sommer
• Prof. Dr. Ralf Hofestädt

» Zur Modulbeschreibung

Journals

Bioinformatics (Oxford)
http://bioinformatics.oxfordjournals.org

BMC Bioinformatics
http://www.biomedcentral.com/bmcbioinformatics/

Journal of Chemical Information and Modeling
http://pubs.acs.org/journal/jcisd8

Journal of Cheminformatics
http://www.jcheminf.com

Journal of Integrative Bioinformatics
http://journal.imbio.de

Journal of Molecular Modeling
http://www.springer.com/chemistry/journal/894

Literatur

• Bruce A, Johnson A, Lewis J, Raff M, Roberts K, Walter P, Molecular Biology of the Cell, 2002
• Cooper GM, Hausman RE, The Cell: A Molecular Approach, 2007
• Luckey M, Membrane Structural Biology, 2008
• Voet D, Voet JG, Pratt CW, Fundamentals of Biochemistry: Life at the Molecular Level, 2006
• Ware C, Information Visualization, 2004

Links

Tools:

• CELLmicrocosmos 2 MembraneEditor: Modeling, Visualization and Analysis of PDB-based Membranes
  http://Cm2.CELLmicrocosmos.org
• CELLmicrocosmos 4 PathwayIntegration: Localization and Visualization of Protein-Interaction Networks in a Virtual Cell
  http://Cm4.CELLmicrocosmos.org
• DAWIS-M.D. - Bioinformatics Data Warehouse Information System
  http://agbi.techfak.uni-bielefeld.de/DAWISMD/
• HIVE (Handy Integration and Visualisation of multimodal Experimental Data, Vanted Plugin)
  http://vanted.ipk-gatersleben.de/addons/hive/download_installation.html
• PathAligner: Metabolic Pathway Retrieval and Alignment
  http://bibiserv.techfak.uni-bielefeld.de/pathaligner/
• VANESA: Visualization and Analysis of Networks in System Biology Applications
  http://vanesa.sourceforge.net/
• VCell - The Virtual Cell
  http://www.nrcam.uchc.edu
• VINEdb: Visualization Integration Network Exploration
  http://agbi.techfak.uni-bielefeld.de/VINEdb/

Simulatoren:

• E-Cell
  http://www.e-cell.org/ecell/

Datenbanken:

• Enzyme
  http://enzyme.expasy.org/
• GO
  http://amigo.geneontology.org/cgi-bin/amigo/go.cgi
• Reactome
  http://www.reactome.org/ReactomeGWT/entrypoint.html
• BRENDA
  http://www.brenda-enzymes.org/
• KEGG
  http://www.genome.jp/kegg/
• PDB
  http://www.rcsb.org/pdb/home/home.do
• UniProt
  http://www.uniprot.org/

Sonstige:

• JUNG
  http://jung.sourceforge.net/