Modultitel
- Analyse Metabolischer Netzwerke
Lehrveranstaltungen des Moduls
- Modellierung und Simulation metabolischer Netzwerke (WS: 2V + 2 Ü)
- Simulation metabolischer Prozesse (SS: 4Pj) oder
- Analyse metabolischer Netzwerke (WS 2S)
Modulverantwortliche(r)
Journals
BioEssayshttp://www.bioessays.demon.co.uk/bioindex.htm
BIOforum
http://www.bioforum.de
Bioinformatics
http://bioinformatics.oupjournals.org/
BIOspektrum
http://www.spektrum-verlag.com/zschrift/09400867/index.htm
BioTechniques
http://www.BioTechniques.com/
Biotechnology & Bioengineering
http://www.interscience.wiley.com/jpages/0006-3592/
Briefings in Bioinformatics.
http://www.henrystewart.com/journals/bib/
Cell
http://www.cell.com/
Comparative and Functional Genomics.
http://www.interscience.wiley.com/jpages/1531-6912/
Current Issues in Molecular Biology. A journal publishing reviews, and mini-reviews on all aspects of molecular biology.
http://cimb.org/
EJB - Electronic Journal of Biotechnology
http://www.ejb.org/
Evolutionary Computation
http://mitpress.mit.edu/journal-home.tcl?issn=10636560
Functional & Integrative Genomics.
http://link.springer.de/link/service/journals/10142/index.htm
Genetic Programming and Evolvable Machines.
http://www.wkap.nl/journalhome.htm/1389-2576
Genetics
http://www.genetics.org/
Genome Research
http://www.genome.org/
In Silico Biology - An international journal on computational molecular biology
http://www.bioinfo.de/isb/
JIB - Journal of Integrative Bioinformatics
http://journal.imbio.de/
Journal of Biomolecular Techniques
http://www.abrf.org/JBT/JBTindex.html
Journal of Computional Biology
http://www.liebertpub.com/cmb/
Journal of Molecular Microbiology and Biotechnology
http://www.jmmb.net/
Molecular Biology Today. A new journal publishing primary research papers, reviews, and mini-reviews. Available free on the Web.
http://molbio.net/
Molecular Vision is a peer-reviewed journal dedicated to the dissemination of research results in molecular biology, cell biology, and the genetics of the visual system (ocular and cortical).
http://www.molvis.org/molvis/
Nature
http://www.nature.com/
Nature biotechnology
http://www.nature.com/biotech/
Nature genetics
http://www.nature.com/genetics/
Physiological Genomics.
http://physiolgenomics.physiology.org/
PNAS - The Proceedings of the National Academy of Sciences.
http://www.pnas.org/
Protein Engineering
http://protein.oupjournals.org/
Science
http://www.sciencemag.org/
The BioInformer is a quarterly newsletter which focuses on bioinformatics research, developments, and services at theEuropean Bioinformatics Institute (EBI) and elsewhere..
http://bioinformer.ebi.ac.uk/index.html
The EMBO Journal
http://www.emboj.org/
Trends journals online - Trends in biochemical science, in biotechnology, in ecology and evolution, in genetics etc.
http://www.trends.com/
Literatur
J. Collado-Vides und R. Hofestädt (Eds): Gene Regulation and Metabolism - Post-Genomic Computational Approaches. Cambridge, MA: MIT Press, 2002.Ratner V.A.: Molekulargenetische Steurungssysteme. Gustav Fischer Verlag, Stuttgart 1977.
Atlan, H., Koppel, M.: The Cellular Computer DNA: Program or Data. Bulletin of Mathematical Biology, 52, 335 – 348, 1990.
Eberhard Voit: Computational Analysis of Biochemical Systems. Cambridge University Press, 2000.
Koch, I., Reisig, W., Schreiber, F.: Modeling in Systems Biology. The Petri Net Approach. Springer-Verlag, Heidelberg 2011.
Edgar Wingender: Biological Petri Nets. IOS Press 2011.
Arthur W. Burks (Hrsg.): Theory of Self-Reproducing Automata. University of Illinois Press, 1966.
S. A. Kauffman: Metabolic Stability and Epigenesis in Randomly Constructed Genetic Nets. Theoret. Biol. (1969) 22, 437-467.
Links
Datenintegration:- Pedant-Pro™ Sequence Analysis Suite
http://www.biomax.com/products/pedantpro.php - SRS – specialist life science data integration
http://www.biowisdom.com/2009/12/srs/
- MARG: Modelling and Animation of Regulatory Gene Networks
http://www.techfak.uni-bielefeld.de/ags/bi/research/marg/index.shtml - MoVisPP: A web-based tool to model and visualise biochemical pathways using Petri Nets
http://agbi.techfak.uni-bielefeld.de/movispp/ - BioPNML: BioPNML (Biology Petri Net Markup Language) is an attempt to create an extensible DTD for the annotation of biological Petri net modeling.
http://www.techfak.uni-bielefeld.de/~mchen/BioPNML/ - RAMEDIS: Rare Metabolic Diseases Database
http://www.ramedis.de/ - CardioWorkBench: Drug Design for Cardiovascular Diseases
http://www.cardioworkbench.eu/ - Cellmicrocosmos: An interactive stereoscopic visualization of biological cells
http://www.cellmicrocosmos.org - VANESA: Visualization and Analysis of Networks in System Biology Applications
http://vanesa.sourceforge.net/ - PathAligner: Metabolic Pathway Retrieval and Alignment
http://bibiserv.techfak.uni-bielefeld.de/pathaligner/ - VINEdb: Visualization Integration Network Exploration
http://agbi.techfak.uni-bielefeld.de/VINEdb/ - Expertensystem Brutlag
http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.33.4747
- Forest Fire Model
http://schuelaw.whitman.edu/JavaApplets/ForestFireApplet/ - Game of Life
http://www.bitstorm.org/gameoflife/ - L-Systeme
1) http://www.inf.uni-konstanz.de/algo/lehre/ss03/theo/lsys/
2) http://www.generation5.org/content/2002/lse.asp
3) http://www.iwr.uni-heidelberg.de/groups/ngg/People/schuai/ - PIPE 2
http://pipe2.sourceforge.net/ - Renew
http://www.renew.de/ - Gepasi
http://www.gepasi.org/ - Jarnac
http://sys-bio.org/sample-page/ - DBSolve
http://insysbio.ru/index.php?option=com_content&task=view&id=75&Itemid=99&lang=en
http://www.biomedcentral.com/1752-0509/4/109 - E-Cell
http://www.e-cell.org/ecell/
- EMBL Genbank
http://www.ebi.ac.uk/ena - Enzyme
http://enzyme.expasy.org/ - GO
http://amigo.geneontology.org/cgi-bin/amigo/go.cgi - MINT
http://mint.bio.uniroma2.it/mint/Welcome.do - PubChem
http://pubchem.ncbi.nlm.nih.gov/ - SCOP
http://scop.mrc-lmb.cam.ac.uk/scop/ - Reactome
http://www.reactome.org/ReactomeGWT/entrypoint.html - TRANSFAC®
http://www.biobase-international.com/product/transcription-factor-binding-sites - PROTEOME
http://www.biobase-international.com/product/proteome - RegulonDB
http://regulondb.ccg.unam.mx - BRENDA
http://www.brenda-enzymes.org/ - KEGG
http://www.genome.jp/kegg/ - Swiss-Prot
www.ebi.ac.uk/swissprot/ - PDB
http://www.rcsb.org/pdb/home/home.do - CSNDB
http://geo.nihs.go.jp/csndb/ - WIT(ERGO)
https://ergo.integratedgenomics.com - OMIM
http://www.ncbi.nlm.nih.gov/omim - Metagene
http://www.metagene.de - ASDB
http://cbcg.nersc.gov/asdb - ROTE LISTE®
http://www.rote-liste.de/ - Scholz-Datenbank
http://www.scholz-datenbank.de/ - STCDB
http://bibiserv.techfak.uni-bielefeld.de/stcdb - IntAct
http://www.ebi.ac.uk/intact/
- bioinformatik.de: A Yahoo-like Webdirectory for bioinformatics.
http://www.bioinformatik.de - BioCarta: Brings you the Pathways and the Tools to study them.
http://www.biocarta.com - PNML
http://www.informatik.hu-berlin.de/top/pnml/ - Metanet
Interactive Modelling and Simulation of Biochemical Networks - JUNG
http://jung.sourceforge.net/