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A Systematic Petri Net Approach for Multiple-Scale Modeling and Simulation of Biochemical Processes. Applied Biochemistry and Biotechnology, 164(3):338-352, 2011.
- M. Chen, S. Hariharaputran, R. Hofestädt, B. Kormeier, S. Spangardt
Petri net models for the semi-automatic construction of large scale biological networks.
Natural Computing, 10(3):1077-1097, 2011. Online: DOI: 10.1007/s11047-009-9151-y
- R. Hofestädt
Petri nets and the simulation of metabolic networks. Studies in health technology and informatics, 162, 2011.
- R. Hofestädt
Fundamental Features of Metabolic Computing. Proceedings of MICAI 2011, LNCS (Advances in Soft Computing) 7095:143-152, 2011.
- D. Huang, Y. Huang, Y. Bai, D. Chen, R. Hofestadt, C. Klukas, M. Chen
MyBioNet: interactively visualize, edit and merge biological networks on the Web.
Bioinformatics, 2011. Online: DOI: 10.1093/bioinformatics/btr557
- S. Janowski, B. Kormeier, T. Töpel, K. Hippe, R. Hofestädt, N.
Willassen, R. Friesen, S. Rubert, D. Borck, P. Haugen, M. Chen
Modeling of cell-to-cell communication processes with Petri nets using the
example of quorum sensing. Stud Health Technol Inform, 162, 2011. Online Journal:
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- B. Kormeier, K. Hippe, R. Hofestädt
Data Warehouses in Bioinformatics: Integration of Molecular Biological Data. it - Information Technology, 53(5):241-249, 2011.
- M. Lange, J. Chen, D. Borck, C. Colmsee, K. Hippe, B. Kormeier, S. Weise, U. Scholz
The LAILAPS Information Retrieval Portal as Scalable and Integrative Database Query Endpoint. Proceedings of the 6th International Symposium on Health Informatics and Bioinformatis 2011, pp. 37, 2011.
- B. Sommer, T. Dingersen, C. Gamroth, S.E. Schneider, S. Robert, J. Krueger, K.-J. Dietz
CELLmicrocosmos 2.2 Membrane Editor: A Modular Interactive Shape-Based Software Approach To Solve Heterogeneous Membrane Packing Problems. Journal of Chemical Information and Modeling, 51(5):1165-1182, 2011. Online: DOI: 10.1021/ci1003619
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