Preprints & Recent Articles
The more recent ones can be downloaded as pdf's or gzipped postscript files.
They are also available at http://www.arXiv.org.
Mutation-selection models
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S. Kluth, T. Hustedt, E. Baake
The common ancestor process revisited
re-submitted
[Preprint], [arXiv publication] -
E. Baake, R. Bialowons
Ancestral processes with selection: Branching and Moran models
Banach Center Publications, 80 (2008), 33-52
[Preprint], [Journal publication] -
E. Baake, H.-O. Georgii
Mutation, selection, and ancestry in branching models: a variational approach
J. Math. Biol., 54 (2007), 257-303
[Preprint], [Journal publication] -
E. Baake, M. Baake, A. Bovier, M. Klein
An asymptotic maximum principle for essentially linear evolution models
J. Math. Biol., 50 (2005), 83-114
[Preprint], [Journal publication] -
J. Hermisson, O. Redner, H. Wagner, E. Baake
Mutation-selection Balance: Ancestry, Load, and Maximum Principle
Theor. Pop. Biol. 62 (2002), 9-46
[Preprint], [Journal publication] -
E. Baake, H. Wagner
Mutation-selection models solved exactly with methods from statistical mechanics
Gen. Res. 78 (2001), 93-117
[Preprint], [Journal publication] -
E. Baake, W. Gabriel
Biological evolution through mutation, selection, and drift: An introductory review
Ann. Rev. Comp. Phys. VII (2000), 203-264
[Preprint] -
H. Wagner, E. Baake, T. Gerisch
Ising quantum chain and sequence evolution
J. Stat. Phys. 92 (1998), 1017-1052
[Preprint], [Journal publication] -
E. Baake, M. Baake, H. Wagner
Quantum mechanics versus classical probabilities in biological evolution
Phys. Rev. E 57 (1998), 1191-1192
[Preprint], [Journal publication] -
H. Wagner, E. Baake
Ising quantum chain and biological evolution
Physical Applications and Mathematical Aspects of Geometry, Groups and Algebras
eds. H.-D. Doebner, P. Nattermann, W. Scherer, World Scientific, Singapore (1997), vol.II, 821
[Preprint] -
E. Baake, M. Baake, H. Wagner
Ising quantum chain is equivalent to a model of biological evolution
Phys. Rev. Lett. 78 (1997), 559-562 (size: 182 kB) + Erratum!
[Preprint], [Journal publication] -
E. Baake
Diploid Sequence Space, Dominance, and Evolution
Advances in Mathematical Population Dynamics - Molecules, Cells and Man
eds. O. Arino, D. Axelrod, M. Kimmel, World Scientific, Singapore (1997), 1-15
[Preprint] -
E. Baake, T. Wiehe
Bifurcations in haploid and diploid sequence space models
J. Math. Biol. 35 (1997), 321-343
[Preprint], [Journal publication] -
T. Wiehe, E. Baake, P. Schuster
Error propagation in reproduction of diploid organisms.
A case study on single peaked landscapes.
J. Theor. Biol. 177 (1995), 1-15
[Preprint], [Journal publication] -
E. Baake
Diploid models on sequence space
J. Biol. Syst. 3 (1995), 343-349
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S. Kluth, T. Hustedt, E. Baake
Recombination
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E. Baake, U. von Wangenheim
Single-Crossover Recombination and Ancestral Recombination Trees
J. Math. Biol., 2013 (online first),
[Preprint], [Journal publication] -
E. Baake, T. Hustedt
Moment closure in a Moran Model with recombination
Markov Proc. Relat. Fields 17 (2011), 429-446.
[Preprint] -
E. Baake
Deterministic and stochastic aspects of single-crossover recombination
Proceedings of the International Congress of Mathematicians, Hyderabad, India, 2010, Vol. VI, 3037-3053
[Preprint] -
U. von Wangenheim, E. Baake, M. Baake
Single-crossover recombination in discrete time
J. Math. Biol. 60 (2010), 727-760
[Preprint], [Journal publication] -
E. Baake, I. Herms
Single-crossover dynamics: finite versus infinite populations
Bull. Math. Biol. 70 (2008), 603-624
[Preprint], [Journal publication] -
M. Baake, E. Baake
An exactly solved model for recombination, mutation and selection
Can. J. Math. 55 (2003),3-41
[Preprint], [Journal publication] -
E. Baake
Mutation and recombination with tight linkage
J. Math. Biol. 42 (2001), 455-488
[Preprint], [Journal publication]
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E. Baake, U. von Wangenheim
Branching processes
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H.-O. Georgii, E. Baake
Supercritical multitype branching processes: The ancestral type of typical individuals
Adv. Appl. Prob. 35 (2003), 1090-1110
[Preprint], [Journal publication]
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H.-O. Georgii, E. Baake
Immune biology
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F. Lipsmeier, E. Baake
Rare event simulation for T-cell activation,
J. Stat. Phys., 134 (2009), 537-566
[Preprint], [Journal publication] -
F. Lipsmeier, E. Baake
Rare event simulation in immunobiology,
Proc. 7th International Workshop on Rare Event Simulation RESIM 2008,
Rennes, France, 24-26 September 2008
[Preprint] -
N. Zint, E. Baake, F. den Hollander
How T-cells use large deviations to recognize foreign antigens,
J. Math. Biol. 57 (2008), 841-861
[Preprint], [Journal publication]
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F. Lipsmeier, E. Baake
Molecular phylogeny
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E. Baake, A. v. Haeseler
Distance measures in terms of substitution processes
Theor. Pop. Biol. 55 (1999), 166-175
[Preprint], [Journal publication] -
E. Baake
What can and what cannot be inferred from pairwise sequence comparisons?
Math. Biosci. 154 (1998), 1-21
[Preprint], [Journal publication]
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E. Baake, A. v. Haeseler
Luria-Delbrueck experiment
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E. Baake
Are mutations spontaneous or directed?
NAW 5/8 (2007), 171-174
[Preprint], [Newletter publication]
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E. Baake
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