2013 Campbell, Alisha G. and Campbell, James H. and Schwientek, Patrick and Woyke, Tanja and Sczyrba, Alexander and Allman, Steve and Beall, Clifford J. and Griffen, Ann and Leys, Eugene and Podar, Mircea: Multiple Single-Cell Genomes Provide Insight into Functions of Uncultured Deltaproteobacteria in the Human Oral Cavity in PLoS ONE, 8(3) , Pages:e59361, 2013 Campbell, James H and O'Donoghue, Patrick and Campbell, Alisha G and Schwientek, Patrick and Sczyrba, Alexander and Woyke, Tanja and Söll, Dieter and Podar, Mircea: UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota. in Proceedings of the National Academy of Sciences of the United States of America, 2013 2012 El-Kalioby, Mohamed and Abouelhoda, Mohamed and Krüger, Jan and Giegerich, Robert and Sczyrba, Alexander and Wall, Dennis P and Tonellato, Peter: Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package. in BMCBI, 13 Suppl 17, Pages:S22, 2012 Garcia, Sarahi L and McMahon, Katherine D and Martinez-Garcia, Manuel and Srivastava, Abhishek and Sczyrba, Alexander and Stepanauskas, Ramunas and Grossart, Hans-Peter and Woyke, Tanja and Warnecke, Falk: Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton. in ISME J, 7(1) , Pages:137-147, 2012 2011 Hess, Matthias and Sczyrba, Alexander and Egan, Rob and Kim, Tae-Wan and Chokhawala, Harshal and Schroth, Gary and Luo, Shujun and Clark, Douglas S and Chen, Feng and Zhang, Tao and Mackie, Roderick I and Pennacchio, Len A and Tringe, Susannah G and Visel, Axel and Woyke, Tanja and Wang, Zhong and Rubin, Edward M: Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. in Science, 331(6016) , Pages:463-467, 2011 Kim, Tae-Wan and Chokhawala, Harshal A and Hess, Matthias and Dana, Craig M and Baer, Zachary and Sczyrba, Alexander and Rubin, Edward M and Blanch, Harvey W and Clark, Douglas S: High-Throughput In-Vitro Glycoside Hydrolase (HIGH) Screening for Enzyme Discovery. in Angew. Chem. Int. Ed. Engl., 50(47) , Pages:11215-11218, 2011 Sales, Christopher M and Mahendra, Shaily and Grostern, Ariel and Parales, Rebecca E and Goodwin, Lynne A and Woyke, Tanja and Nolan, Matt and Lapidus, Alla and Chertkov, Olga and Ovchinnikova, Galina and Sczyrba, Alexander and Alvarez-Cohen, Lisa: Genome sequence of the 1,4-dioxane-degrading Pseudonocardia dioxanivorans strain CB1190. in J. Bacteriol., 193(17) , Pages:4549-4550, 2011 Swan, Brandon K and Martinez-Garcia, Manuel and Preston, Christina M and Sczyrba, Alexander and Woyke, Tanja and Lamy, Dominique and Reinthaler, Thomas and Poulton, Nicole J and Masland, E Dashiell P and Gomez, Monica Lluesma and Sieracki, Michael E and DeLong, Edward F and Herndl, Gerhard J and Stepanauskas, Ramunas: Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean. in Science, 333(6047) , Pages:1296-1300, 2011 Woyke, Tanja and Sczyrba, Alexander and Lee, Janey and Rinke, Christian and Tighe, Damon and Clingenpeel, Scott and Malmstrom, Rex and Stepanauskas, Ramunas and Cheng, Jan-Fang: Decontamination of MDA Reagents for Single Cell Whole Genome Amplification in PLoS ONE, 6(10) , Pages:e26161, 2011 2010 Gilbert, Jack A and Meyer, Folker and Antonopoulos, Dion and Balaji, Pavan and Brown, C Titus and Brown, Christopher T and Desai, Narayan and Eisen, Jonathan A and Evers, Dirk and Field, Dawn and Feng, Wu and Huson, Daniel and Jansson, Janet and Knight, Rob and Knight, James and Kolker, Eugene and Konstantindis, Kostas and Kostka, Joel and Kyrpides, Nikos and Mackelprang, Rachel and McHardy, Alice and Quince, Christopher and Raes, Jeroen and Sczyrba, Alexander and Shade, Ashley and Stevens, Rick: Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project. in Stand Genomic Sci, 3(3) , Pages:243-248, 2010 2008 Lamprecht, A-L. and Margaria, T. and Steffen, B. and Sczyrba, A. and Hartmeier, S. and Giegerich, R.: GeneFisher-P: variations of GeneFisher as processes in Bio-jETI in BMC Bioinformatics, 9 Suppl 4, Pages:S13, 2008 Sczyrba, A. and Konermann, S. and Giegerich, R.: Two interactive Bioinformatics courses at the Bielefeld University Bioinformatics Server in Briefings in Bioinformatics, Pages:doi:10.1093/bib/bbm063, 2008 2006 Spitzer, M. and Lorkowski, S. and Cullen, P. and Sczyrba, A. and Fuellen, G.: IsoSVM - Distinguishing isoforms and paralogs on the protein level in BMC Bioinformatics, 7, Pages:110, 2006 2005 Sczyrba, A.* and Beckstette, M.* and Brivanlou, A.H. and Giegerich, R. and Altmann, C.R.: XenDB: Full Length cDNA Prediction and Cross Species Mapping in Xenopus laevis in BMC Genomics, 6, Pages:123, 2005 2004 Beckstette, M. and Mailänder, J.T. and Marhöfer, R.J. and Sczyrba, A. and Ohlebusch, E. and Giegerich, R. and Selzer, P.M.: Genlight: Interactive high-throughput sequence analysis and comparative genomics in Journal of Integrative Bioinformatics, 0008, 2004 Beckstette, M. and Sczyrba, A. and Selzer, P.M.: Genlight: Interactive high-throughput sequence analysis and comparative genomics in Proceedings of the German Conference on Bioinformatics, Pages:179-186 (GI Lecture Notes in Informatics) , 2004 Krüger, Jan and Sczyrba, Alexander and Kurtz, Stefan and Giegerich, Robert: e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences in Nucl. Acids. Res., 32(suppl 2) , Pages:W301-304, 2004 Taher, L. and Rinner, O. and Garg, S. and Sczyrba, A. and Morgenstern, B.: AGenDA: gene prediction by cross-species sequence comparison in Nucl. Acids. Res., 32(suppl_2) , Pages:W305-308, 2004 2003 Dondrup, M. and Goesmann, A. and Bartels, D. and Kalinowski, J. and Krause, L. and Linke, B. and Rupp, O. and Sczyrba, A. and Pühler, A. and Meyer, F.: EMMA: a platform for consistent storage and efficient analysis of microarray data in Journal of Biotechnology, 106(2-3) , Pages:135-146, 2003 Morgenstern, B. and Goel, S. and Sczyrba, A. and Dress, A.: AltAVisT : A WWW tool for comparison of alternative multiple alignments in Bioinformatics, 19(3) , Pages:425-426, 2003 Sczyrba, A. and Krüger, J. and Mersch, H. and Kurtz, S. and Giegerich, R.: RNA-related tools on the Bielefeld Bioinformatics Server in Nucleic Acids Research, 31(13) , Pages:3767-3770, 2003 Taher, L. and Rinner, O. and Garg, S. and Sczyrba, A. and Brudno, M. and Batzoglou, S. and Morgenstern, B.: AGenDA: homology-based gene prediction in Bioinformatics, 19(12) , Pages:1575-1577, 2003 2002 Taher, L. and Rinner, O. and Garg, S. and Sczyrba, A. and Brudno, M. and Batzouglou, S. and Morgenstern, B.: AGenDA: A WWW server for gene recognition by comparative sequence analysis in European Conference on Computational Biology 2002, Poster Abstracts, 2002 2001 Altmann, C.R. and Bell, E. and Sczyrba, A. and Pun, J. and Bekiranov, S. and Gaasterland, T. and Brivanlou, A.H.: Microarray-Based Analysis of Early Development in Xenopus laevis in Dev Biol, 236(1) , Pages:64-75, 2001 Gopal, S. and Schroeder, M. and Pieper, U. and Sczyrba, A. and Aytekin-Kurban, G. and Bekiranov, S. and Fajardo, J.E. and Eswar, N. and Sanchez, R. and Sali, A. and Gaasterland, T.: Homology-based annotation yields 1,042 new candidate genes in the Drosophila melanogaster genome in Nat Genet, 27(3) , Pages:337-340, 2001 2000 Gaasterland, T. and Sczyrba, A. and Thomas, E. and Kurban, G.: MAGPIE/EGRET annotation of the 2.9-Mb Drosophila melanogaster Adh region in Genome Res, 10(4) , Pages:502-510, 2000 1998 Sczyrba, A.: Methods for Automatic Annotation of Biological Sequences, Bielefeld University, 1998 Wed Mar 27 12:16:18 CET 2013