Prediction of Drosophila miRNA targets


This is supplemental material to

Marc Rehmsmeier *, Peter Steffen, Matthias Höchsmann, Robert Giegerich
Fast and effective prediction of microRNA/target duplexes
RNA, 10:1507-1517, 2004. * corresponding author

The software is available as a web tool and for download on the Bielefeld Bioinformatics Server ( link )

The predictions were done with helix constraint from 2 to 7 in the miRNA, with target specific reevaluation of extreme value distribution parameters, and calculation of effective numbers of orthologous targets for cross-species comparison.

bantam
let-7
miR-1
miR-2a
miR-2b
miR-2c
miR-3
miR-4
miR-5
miR-6
miR-7
miR-8
miR-9a
miR-9b
miR-9c
miR-10
miR-11
miR-12
miR-13a
miR-13b
miR-14
miR-31a
miR-31b
miR-33
miR-34
miR-79
miR-87
miR-92a
miR-92b
miR-100
miR-124
miR-125
miR-133
miR-184
miR-184S
miR-210
miR-219
miR-263a
miR-263b
miR-274
miR-275
miR-276a
miR-276aS
miR-276b
miR-277
miR-278
miR-279
miR-280
miR-281
miR-281aS
miR-281bS
miR-282
miR-283
miR-284
miR-285
miR-286
miR-287
miR-288
miR-289
miR-303
miR-304
miR-305
miR-306
miR-306S
miR-307
miR-308
miR-309
miR-310
miR-311
miR-312
miR-313
miR-314
miR-315
miR-316
miR-317
miR-318
miR-iab-4-3p
miR-iab-4-5p

Marc Rehmsmeier - Last Change: 22.09.04