edu.ucla.belief.io.geneticlinkage
Class Pedigree.PseudoLoci

Object
  extended by Pedigree.PseudoLoci
Enclosing class:
Pedigree

public abstract static class Pedigree.PseudoLoci
extends Object


Constructor Summary
Pedigree.PseudoLoci()
           
 
Method Summary
abstract  int chromoOrd(int indx)
           
abstract  double geneFreq(int locusInputOrd, int allele)
           
abstract  int getChangingS1()
           
abstract  int getChangingS2()
           
abstract  int getComplex1InputOrd(int locusInputOrd)
           
abstract  double getComplexPenetrance(int locusInputOrd, String p, int i, int j, int k)
           
abstract  int getLociType(int lociIndx)
           
abstract  int getNumAlleles(int lociIndx)
           
abstract  int getNumLoci()
           
abstract  int getNumPheno()
           
abstract  double getPenetrance(int locusInputOrd, String p, int i, int j)
           
abstract  double getRecombF(String sName, int i)
           
abstract  double getRecombM(String sName, int i)
           
abstract  int inputOrd(int indx)
           
abstract  boolean isComplex1(int lociIndx)
           
abstract  boolean isComplex2(int lociIndx)
           
abstract  boolean sexLinked()
           
 
Methods inherited from class Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

Pedigree.PseudoLoci

public Pedigree.PseudoLoci()
Method Detail

getNumLoci

public abstract int getNumLoci()

getNumPheno

public abstract int getNumPheno()

getLociType

public abstract int getLociType(int lociIndx)

isComplex1

public abstract boolean isComplex1(int lociIndx)

isComplex2

public abstract boolean isComplex2(int lociIndx)

getComplex1InputOrd

public abstract int getComplex1InputOrd(int locusInputOrd)

getNumAlleles

public abstract int getNumAlleles(int lociIndx)

getChangingS1

public abstract int getChangingS1()

getChangingS2

public abstract int getChangingS2()

getRecombM

public abstract double getRecombM(String sName,
                                  int i)

getRecombF

public abstract double getRecombF(String sName,
                                  int i)

getPenetrance

public abstract double getPenetrance(int locusInputOrd,
                                     String p,
                                     int i,
                                     int j)

getComplexPenetrance

public abstract double getComplexPenetrance(int locusInputOrd,
                                            String p,
                                            int i,
                                            int j,
                                            int k)

inputOrd

public abstract int inputOrd(int indx)

chromoOrd

public abstract int chromoOrd(int indx)

geneFreq

public abstract double geneFreq(int locusInputOrd,
                                int allele)

sexLinked

public abstract boolean sexLinked()


Copyright 2010 UCLA Automated Reasoning Group