edu.ucla.belief.io.geneticlinkage
Class Pedigree.PseudoLoci
Object
Pedigree.PseudoLoci
- Enclosing class:
- Pedigree
public abstract static class Pedigree.PseudoLoci
- extends Object
Method Summary |
abstract int |
chromoOrd(int indx)
|
abstract double |
geneFreq(int locusInputOrd,
int allele)
|
abstract int |
getChangingS1()
|
abstract int |
getChangingS2()
|
abstract int |
getComplex1InputOrd(int locusInputOrd)
|
abstract double |
getComplexPenetrance(int locusInputOrd,
String p,
int i,
int j,
int k)
|
abstract int |
getLociType(int lociIndx)
|
abstract int |
getNumAlleles(int lociIndx)
|
abstract int |
getNumLoci()
|
abstract int |
getNumPheno()
|
abstract double |
getPenetrance(int locusInputOrd,
String p,
int i,
int j)
|
abstract double |
getRecombF(String sName,
int i)
|
abstract double |
getRecombM(String sName,
int i)
|
abstract int |
inputOrd(int indx)
|
abstract boolean |
isComplex1(int lociIndx)
|
abstract boolean |
isComplex2(int lociIndx)
|
abstract boolean |
sexLinked()
|
Pedigree.PseudoLoci
public Pedigree.PseudoLoci()
getNumLoci
public abstract int getNumLoci()
getNumPheno
public abstract int getNumPheno()
getLociType
public abstract int getLociType(int lociIndx)
isComplex1
public abstract boolean isComplex1(int lociIndx)
isComplex2
public abstract boolean isComplex2(int lociIndx)
getComplex1InputOrd
public abstract int getComplex1InputOrd(int locusInputOrd)
getNumAlleles
public abstract int getNumAlleles(int lociIndx)
getChangingS1
public abstract int getChangingS1()
getChangingS2
public abstract int getChangingS2()
getRecombM
public abstract double getRecombM(String sName,
int i)
getRecombF
public abstract double getRecombF(String sName,
int i)
getPenetrance
public abstract double getPenetrance(int locusInputOrd,
String p,
int i,
int j)
getComplexPenetrance
public abstract double getComplexPenetrance(int locusInputOrd,
String p,
int i,
int j,
int k)
inputOrd
public abstract int inputOrd(int indx)
chromoOrd
public abstract int chromoOrd(int indx)
geneFreq
public abstract double geneFreq(int locusInputOrd,
int allele)
sexLinked
public abstract boolean sexLinked()
Copyright 2010 UCLA Automated Reasoning Group