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Selected Publications

2016

  • Y. L. Orlov, A. V. Baranova, R. Hofestädt, N. A. Kolchanov
    Computational genomics at BGRS\SB-2016: introductory note.
    BMC Genomics 17:3350, 2016.
    DOI: 10.1186/s12864-016-3350-6
  • A. Winter, R.-D. Hilgers, R. Hofestädt, P. Knaup-Gregori, C. Ose, A. Timmer
    Data Integration for Integrated Research and Care.
    Methods of Information in Medicine 55(4):365-366, 2016.
    DOI: 10.3414/ME2016040001
  • Q. Li, Y. Zhou, Y. Jiao, Z. Zhang, L. Bai, L. Tong, X. Yang, B. Sommer, R. Hofestädt, M. Chen
    DaTo: an atlas of biological databases and tools.
    Journal of Integrative Bioinformatics 13(2):297, 2016.
    DOI: 10.2390/biecoll-jib-2016-297
  • V. Ogultarhan, A. Shoshi, R. Magnucki, B. Kormeier, R. Hofestädt
    KATIS: An eHealth System for Complementary Medicine.
    IOS Press in the Studies in Health Technologies and Informatics series 223:167-173, 2016.
    DOI: 10.3233/978-1-61499-645-3-167
  • S. Mueller, B. Sommer, C. Backes, J. Haas, B. Meder, E. Meese, A. Keller
    From single variants to protein cascades multiscale modeling of single nucleotide variant sets in genetic disorders.
    Journal of Biological Chemistry 291(4):1582-1590, 2016.
    DOI: 10.1074/jbc.M115.695247
  • G. Kovanci, M. Ghaffar, B. Sommer
    Web-based hybrid-dimensional Visualization and Exploration of Cytological Localization Scenarios.
    Journal of Integrative Bioinformatics 13(4):298, 2016
    DOI: 10.2390/biecoll-jib-2016-298
  • B. Sommer, A. Hamacher, O. Kaluza, T. Czauderna, M. Klapperstück, N. Biere, M. Civico, B. Thomas, D. G. Barnes, F. Schreiber
    Stereoscopic Space Map—Semi-immersive Configuration of 3D-stereoscopic Tours in Multi-display Environments.
    Electronic Imaging 2016(5):1-9, 2016.
    DOI: 10.2352/ISSN.2470-1173.2016.5.SDA-429

2015

  • J. Allmer, C. Brinkrolf, R. Hofestädt, M. D. Saçar Demirci (eds)
    Computational Systems Biology: German/Russian/Turkish Network of Computational Systems Biology - Report 2015
    Shaker Verlag, Aachen 2015
  • B. Sommer, S. J. Wang, L. Xu, M. Chen, F. Schreiber
    Hybrid-Dimensional Visualization and Interaction - Integrating 2D and 3D Visualization with Semi-Immersive Navigation Techniques.
    In Big Data Visual Analytics (BDVA) 1-8. IEEE, 2015.
    DOI: 10.1109/BDVA.2015.7314295
  • F. Schreiber, G. D. Bader, M. Golebiewski, M. Hucka, B. Kormeier, N. Le Novère, C. Myers, D. Nickerson, B. Sommer, D. Waltemath, S. Weise
    Specifications of Standards in Systems and Synthetic Biology.
    Journal of integrative Bioinformatics 12(2):258, 2015.
    DOI: 10.2390/biecoll-jib-2015-258
  • L. Zhu, A. Malatras, M. Thorley, I. Aghoghogbe, A. Mer, S. Duguez, G. Butler-Browne, T. Voit, W. Duddy
    CellWhere: graphical display of interaction networks organized on subcellular localizations.
    Nucleic Acids Research 43 (W1): W571-W575, 2015.
    DOI: 10.1093/nar/gkv354
  • X. Meng, J. Wang, C. Yuan, X. Li, Y. Zhou, R. Hofestädt, M. Chen
    CancerNet: a database for decoding multilevel molecular interactions across diverse cancer types.
    Oncogenesis 4, e177, 2015.
    DOI: 10.1038/oncsis.2015.40
  • M. Lewinski, A. Hallmann, D. Staiger
    Genome-wide identification and phylogenetic analysis of plant RNA binding proteins comprising both RNA recognition motifs and contiguous glycine residues.
    Molecular Genetics and Genomics, online access, 2015
    DOI: 10.1007/s00438-015-1144-1
  • A. Shoshi, T. Hoppe, B. Kormeier, V. Ogultarhan, R. Hofestädt
    GraphSAW: A web-based system for graphical analysis of drug interactions and side effects using pharmaceutical and molecular data.
    BMC Medical Informatics and Decision Making 15:15, 2015.
    DOI: 10.1186/s12911-015-0139-5
  • A. Shoshi, V. Ogultarhan, T. Hoppe, B. Kormeier, U. Möller, R. Hofestädt
    Identifying adverse drug reactions and drug-induced diseases using network-based drug mapping.
    Journal of Bioinformatics and Computational Biology 13(1):1540007, 2015.
    DOI: 10.1142/S0219720015400077

2014

  • C. Brinkrolf, C., S. J. Janowski, B. Kormeier, M. Lewinski, K. Hippe, D. Borck, R. Hofestädt
    VANESA - A Software Application for the Visualization and Analysis of Networks in Systems Biology Applications.
    Journal of Integrative Bioinformatics 11(2):239, 2014.
    DOI: 10.2390/biecoll-jib-2014-239
  • V. Leder, M. Lummer, K. Tegeker, F. Humpert, M. Lewinski, M. Schüttpelz, D. Staiger
    Mutational definition of binding requirements of an hnRNP-like protein in Arabidopsis using fluorescence correlation spectroscopy
    Biochemical and Biophysical Research Communications 453(1), 2014
    DOI: 10.1016/j.bbrc.2014.09.056
  • M. Chen, R. Hofestädt
    Open Problems in Petri Net Modeling and Simulation of Biological Systems.
    it–Information Technology 56(2):76–81, 2014.
    DOI: 10.1515/itit-2013-1021
  • M. Chen, R. Hofestädt (eds)
    Approaches in Integrative Bioinformatics - Towards the Virtual Cell
    ISBN:3642412807, Springer Verlag Heidelberg New York Dordrecht London, 2014.
    • M. Chen, R. Hofestädt
      Integrative Bioinformatics
      in M. Chen, R. Hofestädt (eds): Approaches in Integrative Bioinformatics - Towards the Virtual Cell, ISBN:3642412807, Springer Verlag, 3-20, 2014.
      DOI: 10.1007/978-3-642-41281-3_1
    • B. Kormeier
      Data Warehouses in Bioinformatics
      in M. Chen, R. Hofestädt (eds): Approaches in Integrative Bioinformatics - Towards the Virtual Cell, ISBN:3642412807, Springer Verlag, 111-130, 2014.
      DOI: 10.1007/978-3-642-41281-3_4
    • S. J. Janowski, B. Kaltschmidt, C. Kaltschmidt
      Biological Netowrk Modeling and Analysis
      in M. Chen, R. Hofestädt (eds): Approaches in Integrative Bioinformatics - Towards the Virtual Cell, ISBN:3642412807, Springer Verlag, 203-244, 2014.
      DOI: 10.1007/978-3-642-41281-3_8
    • B. Sommer
      Network Analysis and Integration in a Virtual Cell Environment
      in M. Chen, R. Hofestädt (eds): Approaches in Integrative Bioinformatics - Towards the Virtual Cell, ISBN:3642412807, Springer Verlag, 275-296, 2014.
      DOI: 10.1007/978-3-642-41281-3_10
  • R. Giegerich, R. Hofestädt, T. Nattkemper (eds)
    German Conference on Bioinformatics 2014.
    LNI, 235, Köllen Verlag, Bonn 2014.
  • R. Hofestädt, A. Shoshi (eds)
    Computational Systems Biology: german/russian virtual network of bioinformatics - Report 2014.
    Shaker Verlag, Aachen 2014.
  • O. V. Popik, O. V. Saik, E. D. Petrovskiy, B. Sommer, R. Hofestädt, I. N. Lavrik, V. A. Ivanisenko
    Analysis of signaling networks distributed over intracellular compartments based on protein-protein interactions
    BMC Genomics 2014, 15(Suppl 12):S7
    DOI: 10.1186/1471-2164-15-S12-S7
  • B. Sommer (ed)
    Proceedings of CELLmicrocosmos neXt 2014
    Bielefeld University, Bielefeld, 2014.
    DOI: 10.2390/biecoll-next2014-0
  • B. Sommer, C. Bender, T. Hoppe, C. Gamroth, L. Jelonek
    Stereoscopic Cell Visualization: From Mesoscopic to Molecular Scale.
    Journal of Electronic Imaging 23(1):011007–1 – 011007–10, 2014
    DOI: 10.1117/1.JEI.23.1.011007
  • T. Waltemate, B. Sommer, M. Botsch
    Membrane Mapping: Combining Mesoscopic and Molecular Cell Visualization.
    Proceedings of Eurographics Workshop on Visual Computing for Biology and Medicine, pp. 89–96. Vienna, Austria: Eurographics Association, 2014.
    DOI: 10.2312/vcbm.20141187

2013

  • R. Hofestädt, B. Kormeier, M. Lange, F. Schreiber, B. Sommer, S. Weise
    Editorial: JIBtools - a Strategy to Reduce the Bioinformatics Analysis Gap.
    Journal of Integrative Bioinformatics, 10(1):226, 2013.
    http://journal.imbio.de/index.php?paper_id=226
  • H.-M. Lee, K.-J. Dietz, R. Hofestädt
    Computational construction of specialized biological networks.
    Journal of Bioinformatics and Computational Biology, 11(1):1340003, 2013.
    DOI: 10.1142/S0219720013400039
  • G. Lukat, J. Krüger, B. Sommer
    APL@Voro: A Voronoi-Based Membrane Analysis Tool for GROMACS Trajectories. Journal of Chemical Information and Modeling, 53(11):2908-25, 2013.
    DOI: 10.1021/ci400172g
  • R. Hofestädt.
    Computerunterstützte Diagnose von Erkrankungen.
    Management & Krankenhaus, 4/2013:22, 2013.
  • B. Sommer
    Membrane Packing Problems: A short Review on computational Membrane Modeling Methods and Tools.
    Computational and Structural Biotechnology Journal, 5(6):e201302014, 2013.
    DOI: 10.5936/csbj.201302014
  • B. Sommer, K. Hippe, P. S. Demenkov, P. Arrigo, B. Kormeier, Ö. Ates, A. V. Kochetov, V. A. Ivanisenko, N. A. Kolchanov, R. Hofestädt
    Subcellular Localization Charts: a new visual Methodology for the semi-automatic Localization of protein-related Data Sets.
    Journal of Bioinformatics and Computational Biology, 11(1):1340005, 2013.
    DOI: 10.1142/S0219720013400052
  • A. Winter, R.-D. Hilgers, R. Hofestädt, P. Knaup-Gregori, C. Ose, A. Trimmer
    More than Four Decades of Medical Informatics Education for Medical Students in Germany.
    http://www.schattauer.de/en/magazine/subject-areas/journals-a-z/methods/contents/archivestandard/issue/1744/manuscript/19685.html

2012

  • M. Heiner, R. Hofestädt (eds.)
    Biological Processes & Petri Nets. Proceedings of the 3rd International Workshop on Biological Processes & Petri Nets, a satellite event of PETRI NETS 2012. CEUR-WS, 2012. Online Journal: http://ceur-ws.org/Vol-852/
  • R. Hofestädt
    Modeling aspects of the virtual cell. Proceedings of the BGRS 2012, Novosibirsk 2012, 122, 2012.
  • R. Hofestädt, N. Kolchanov N (eds.)
    German/Russian Network of Computational Systems Biology: Report 2012. Shaker Verlag, Aachen, 2012.
  • C. Klenke, S. Janowski, D. Borck, D. Widera, L. A. Ebmeyer, J. Kalinowski, A. Leichtle, R. Hofestädt, T. Upile, C. Kaltschmidt, B. Kaltschmidt, and H. Sudhoff
    Identification of Novel Cholesteatoma-related Gene Expression Signatures Using Full-genome Microarrays. PloS One, 2012. Online Journal: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0052718
  • S. Proß, S. J. Janowski, B. Bachmann, C. Kaltschmidt, B. Kaltschmidt
    PNlib - A Modelica Library for Simulation of Biological Systems Based on Extended Hybrid Petri Nets. Proceedings of the 3rd International Workshop on Biological Processes and Petri Nets, 852, 2012. Online Journal: http://ceur-ws.org/Vol-826/paper05.pdf
  • S. Proß, S. J. Janowski, R. Hofestädt, Bachman B
    A New Object-Oriented Petri Net Simulation Environment Based On Modelica. Proceedings of the 2012 Winter simulation Conference, IEEE, 2012.
  • S. Rubert, C. Gamroth, J. Krüger, and B. Sommer
    Grid Workflow Approach Using the CELLmicrocosmos 2.2 MembraneEditor and UNICORE to Commit and Monitor GROMACS Jobs. Proceedings of the Grid Workflow Workshop (GWW2011), Cologne, Germany, March 4, 2011. 826. CEUR-WS, 2012. Online Journal: http://ceur-ws.org/Vol-826/paper05.pdf
  • Al. Shoshi, Ar. Shoshi, R. Hofestädt
    KAIS: Ein webbasiertes System zur patientenindividuellen Arzneimittel-Interaktionsprüfung. In: Informatik 2012. Proceedings: Informatik 2012: Was bewegt uns in der/die Zukunft?. LNI P-208:1565-1574, 2012.
  • B. Sommer, V. Ivanisenko, P. Arrigo and R. Hofestädt
    Prediction and 3D visualization of biological networks using cytological disease mapping. EMBnet.journal, Volume 18, Supplement B, 115-116, 2012. Online Journal: http://journal.embnet.org/index.php/embnetjournal/article/view/572

2011

  • M. Chen, M. Hu, R. Hofestädt
    A Systematic Petri Net Approach for Multiple-Scale Modeling and Simulation of Biochemical Processes. Applied Biochemistry and Biotechnology, 164(3):338-352, 2011.
  • M. Chen, S. Hariharaputran, R. Hofestädt, B. Kormeier, S. Spangardt
    Petri net models for the semi-automatic construction of large scale biological networks. Natural Computing, 10(3):1077-1097, 2011. Online: DOI: 10.1007/s11047-009-9151-y
  • R. Hofestädt
    Petri nets and the simulation of metabolic networks. Studies in health technology and informatics, 162, 2011.
  • R. Hofestädt
    Fundamental Features of Metabolic Computing. Proceedings of MICAI 2011, LNCS (Advances in Soft Computing) 7095:143-152, 2011.
  • D. Huang, Y. Huang, Y. Bai, D. Chen, R. Hofestadt, C. Klukas, M. Chen
    MyBioNet: interactively visualize, edit and merge biological networks on the Web. Bioinformatics, 2011. Online: DOI: 10.1093/bioinformatics/btr557
  • S. Janowski, B. Kormeier, T. Töpel, K. Hippe, R. Hofestädt, N. Willassen, R. Friesen, S. Rubert, D. Borck, P. Haugen, M. Chen
    Modeling of cell-to-cell communication processes with Petri nets using the example of quorum sensing. Stud Health Technol Inform, 162, 2011. Online Journal: http://booksonline.iospress.nl/Content/View.aspx?piid=19555
  • B. Kormeier, K. Hippe, R. Hofestädt
    Data Warehouses in Bioinformatics: Integration of Molecular Biological Data. it - Information Technology, 53(5):241-249, 2011.
  • M. Lange, J. Chen, D. Borck, C. Colmsee, K. Hippe, B. Kormeier, S. Weise, U. Scholz
    The LAILAPS Information Retrieval Portal as Scalable and Integrative Database Query Endpoint. Proceedings of the 6th International Symposium on Health Informatics and Bioinformatis 2011, pp. 37, 2011.
  • B. Sommer, T. Dingersen, C. Gamroth, S.E. Schneider, S. Robert, J. Krueger, K.-J. Dietz
    CELLmicrocosmos 2.2 Membrane Editor: A Modular Interactive Shape-Based Software Approach To Solve Heterogeneous Membrane Packing Problems. Journal of Chemical Information and Modeling, 51(5):1165-1182, 2011. Online: DOI: 10.1021/ci1003619

2010

  • K. Hippe, B. Kormeier, T. Töpel, S. Janowski, R. Hofestädt
    DAWIS-M.D. - A Data Warehouse System for Metabolic Data. GI Jahrestagung (2) 2010: 720-725.
  • R. Hofestädt, N. Kolchanov N (eds.)
    Computational Systems Biology. Shaker Verlag, Aachen, 2010.
  • S. Janowski, B. Kormeier, T. Töpel, K. Hippe, R. Hofestädt, N. Willassen, R. Friesen, S. Rubert, D. Borck, P. Haugen, M. Chen.
    Modeling of cell-to-cell communication processes with Petri nets using the example of quorum sensing. In Silico Biology 10:0003, 2010. Online Journal: http://www.bioinfo.de/isb/2010/10/0003/
  • B. Kormeier, K. Hippe, T. Töpel, R, Hofestädt
    CardioVINEdb: a data warehouse approach for integration of life science data in cardiovascular diseases. Journal of Integrative Bioinformatics, 7(1):142, 2010. Online Journal: http://journal.imbio.de/index.php?paper_id=142
  • H. Lee, K.-J. Dietz, R. Hofestädt
    Prediction of thioredoxin and glutaredoxin target proteins by identifying reversibly oxidized cysteinyl residues. IB10 Article, Journal of Integrative Bioinformatics (Special Issue) 7(3), 2010. Online Journal: http://journal.imbio.de/article.php?aid=130
  • B. Sommer
    Membranen für alle. Nachrichten aus der Chemie, 58(10):1030-1032, 2010. Download at: http://Cm2.CELLmicrocosmos.org
  • B. Sommer, J. Künsemöller, N. Sand, A. Husemann, M. Rumming, B. Kormeier
    CELLmicrocosmos 4.1: An interactive approach to Integrating spatially localized metabolic networks into a virtual 3D cell environment. In Fred, Ana; Filipe, Joaquim; Gamboa, Hugo (eds.): Proceedings of Bioinformatics 2010: 90-95, 2010, ISBN 978-989-674-019-1. Download at: http://Cm4.CELLmicrocosmos.org
  • B. Sommer, E. S. Tiys, B. Kormeier, K. Hippe, S. Janowski, T. V. Ivanisenko, A. O. Bragin, P. Arrigo, P. S. Demenkov, A. V. Kochetov, V. A. Ivanisenko, N. A. Kolchanov, R. Hofestädt
    Visualization and Analysis of a Cardio Vascular Disease- and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches. In: Journal of Integrative Bioinformatics, 7(1):148, 2010. Online Journal: http://journal.imbio.de/index.php?paper_id=148.
  • T. Töpel, D. Scheible, F. Trefz, R. Hofestädt
    RAMEDIS: a comprehensive information system for variations and corresponding phenotypes of rare metabolic diseases. Human Mutation, 31(1):E1081-E1088, 2010 (Published Online: 1 Dec 2009).

2009

  • Alban Shoshi und Arben Shoshi. KAIS : Ein Krankheiten- und Arzneimittelinformationssystem. In: 54. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie (gmds). Essen, 07.-10.09.2009. Düsseldorf: German Medical Science GMS Publishing House; 2009.
  • T. Töpel, D. Scheible, F. Trefz, R. Hofestädt
    RAMEDIS: a comprehensive information system for variations and corresponding phenotypes of rare metabolic diseases. Hum Mutat., 31(1):E1081-E1088, 2010 (Published Online: 1 Dec 2009).
  • R. Hofestädt and E.-W. Mayr
    Bioinformatik. In: Informatik Spektrum, Band 32:4, Springer Verlag, 285-286, 2009.
  • M. Chen, H. Hariharaputran, R. Hofestädt, B. Kormeier und S. Spangardt
    Petri Net Models for the Semi-automatic Construction of Large Scale Biological Networks. Natural Computing, DOI:10.1007/s11047-009-9151-y, 2009.
  • R. Hofestädt
    DNA-Programming Language of Life. HBSO, 13:1, 68-72, 2009.
  • M. Chen und R. Hofestädt
    Editors: Proceedings International Workshop on Computational & Integrative Biology. University Hanzhou, www.cls.zju.edu.cn/binfo/ib/2009
  • R. Hofestädt, K. Kuhn, W. Müller and C. Türker
    Daten in den Lebenswissenschaften: Vom Paper über Datenbanken zur integrierten Informationsquelle. In: Informatik 2009. Proceedings: Informatik 2009 - Im Focus das Leben. LNI 154, 33-34., 2009
  • B. Kormeier, K. Hippe, T. Töpel und R. Hofestädt
    CARDIOVINEdb: a data warehouse approach for integration of life science in cardiovascular diseases. In: Informatik 2009. Proceedings: Informatik 2009 - Im Focus das Leben. LNI 154, Seite 40 und 704, 2009.

2008

  • S. Hariharaputran, T. Töpel, T. Brockschmidt, R. Hofestädt
    VINEdb: a data warehouse for integration and interactive exploration of life science data.
    Integrative Bioinformatics Yearbook 2007. Shaker Verlag Aachen 2008, 63-74.
  • F. Trefz, D. Scheible, H. Götz, T. Töpel, R. Hofestädt, G. Frauendienst-Egger: METAGENE and RAMEDIS: databases for metabolic diseases and patients with inborn errors on metabolism. Journal of Inherited Metabolic Disease, 2008, 31:289.
  • T. Töpel and K. Amling. Informationsfusion biomedizinischer Daten und klinischer Fallberichte im Bereich angeborener Stoffwechselerkrankungen. <http://www.egms.de/de/meetings/gmds2008/08gmds133.shtml> In 53. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie (gmds). Stuttgart, 15.-19.09.2008. Düsseldorf: German Medical Science GMS Publishing House, 2008.
  • S. Hariharaputran; T. Töpel; T. Oberwahrenbrock and R. Hofestädt: Alignment of Linear Biochemical Pathways Using Protein Structural Classification. Nature Precedings,doi:10.1038/npre.2008.1943.1, 2008.
  • T. Töpel, B. Kormeier, A. Klassen and R. Hofestädt. BioDWH: A Data Warehouse Kit for Life Science Data Integration.<http://journal.imbio.de/index.php?paper_id=93> Journal of Integrative Bioinformatics, 5(2):93, 2008.
  • T. Töpel. A customizable framework to access and interconnect clinical patient data and molecular biology information. <http://doi.ieeecomputersociety.org/10.1109/CBMS.2008.131> In Proceedings of The 21th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2008), Jyväskylä, Finland, June 17-19, 2008.
  • R. Hofestädt and T. Töpel (eds.). Integrative Bioinformatics - Yearbook 2007. Shaker Verlag, 2008.
  • R. Hofestädt (2008) DNA - Programming Language of Life ? In: Kolchanov N. and R. Hofestädt. (eds.): BGRS'08, Russian Academy of Science, Novosibirsk 2008, 84. (also VOGiS Herald journal)

2007

  • Hofestädt R.
    Extended Backus-System for the representation and specification of the genome.
    Journal of Bioinformatics and Computational Biology, 5-2(b):457-466, 2007.
  • T. Topel, J. Neumann and R. Hofestadt.
    A medical case-based reasoning component for the rare metabolic diseases database RAMEDIS.
    In Proceedings of The 20th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2007), Maribor, Slovenia, June 20 - 22, 2007, pp. 7-11, 2007.
  • S. Hariharaputran, T. Töpel, T. Oberwahrenbrock and R. Hofestädt.
    SignAlign: prediction and alignment of biochemical pathways using protein structural information.
    In Proceedings of 5th International Conference on Pathways, Networks, and Systems, Greece, June 24 - 29, 2007.
  • R. Hofestädt and T. Töpel (eds.).
    Integrative Bioinformatics – Yearbook 2006.
    Shaker Verlag, 2007.
  • S. Hariharaputran, T. Töpel, B. Brockschmidt, and R. Hofestädt.
    VINEdb: a data warehouse for integration and interactive exploration of life science data.
    In Proceedings of the 4th Integrative Bioinformatics Workshop (IB 07) , University of Ghent, Belgium, September 10 - 12, 2007.
  • The NMITLI-BioSuite Team.
    BioSuite: A comprehensive bioinformatics software package.
    Current Science, 92(1):29-38, 2007.
  • K. Sivapriya, S. Hariharaputran, V.L. Suhas, N. Chandra, S. Chandrasekaran.
    Conformationally locked thiosugars as potent alpha-mannosidase inhibitors: Synthesis, biochemical and docking studies.
    Bioorg Med Chem., 15(17):5659-65, 2007.

2006

  • Hofestädt R.
    An extended Backus System for the presentation and analysis of DNA sequences.
    Kolchanov N. and Hofestädt R. (eds.): BGRS’06,
    Russian Academy of Science, Novosibirsk 2006, Volume I, 48-52.
  • Kolchanov N. and R. Hofestädt (eds.)
    Proceedings of the 5th International Conference on Bioinformatics of Genome Regulation and Structure (BGRS). Volume 1-3,Russian Academy of Science, Novosibirsk 2006.
  • Hofestädt R. (ed.)
    Integrative Bioinformatics.
    Shaker Verlag, Aachen 2006.
  • Prins B. and Hofestädt R.
    MILAN - A medical information-system linking agents to metabolic networks.
    Journal of Integrative Bioinformatics,  2006.
  • M. Chen and R. Hofestädt
    Prediction and Alignment of Metabolic Pathways.
    In Bioinformatics of Genome Regulation and Structure II, N. Kolchanov el al (eds.), pp. 355-365, 2006.
  • M. Chen and R. Hofestädt
    A medical bioinformatics approach for metabolic disorders: Biomedical data prediction, modeling, and systematic analysis.
    Journal of Biomedical Informatics, 39(2): 147-159, 2006.
  • N. Kolchanov, R. Hofestädt and L. Milanesi (eds.)
    Bioinformatics of Genome Regulation and Structure II,
    Springer, New York, 2006.
  • T. Töpel, R. Hofestädt, D. Scheible and F. Trefz
    RAMEDIS, the rare metabolic diseases database.
    Applied Bioinformatics, 5(2):115-118, 2006.

2005

  • R. Hofestädt
    Bioinformatik.
    In Handbuch der Medizinischen Informatik, Thomas Lehmann (ed.),
    Hanser Verlag , 2005, 253-298.
  • R. Hofestädt (ed.)
    Yearbook Bioinformatics 2004.
    Magdeburg: IMBio, Informationsmanagement in der Biotechnologie e.V., 2005.
  • A. Freier, R. Hofestaedt and T. Toepel.
    Investigating the Effective Range of Agents by Using Integrative Modelling.
    In Handbook of Toxicogenomics, J. Borlak (ed.).
    Wiley-VCH, 2005, 233-252.
  • Ming Chen, Andreas Freier, Ralf Hofestädt
    Bioinformatics Approaches for Metabolic Pathways
    In Handbook of Genome Research (Christoph W. Sensen ed.), pp.461-490.
  • M. Chen and R. Hofestädt
    An algorithm for linear metabolic pathway alignment
    In Silico Biol. 5(2): 111-128.
  • R. Hofestädt and T. Töpel.
    Medical Bioinformatics: Detecting Molecular Diseases with Case-Based Reasoning .
    In Bioinformatics using Computational Intelligence Paradigms, U. Seiffert (ed.).
    Springer-Verlag, 2005, 1-24.
  • F. K. Trefz, D. Scheible, G: Frauendienst-Egger, J. Sander, H. Korall, T. Töpel and R. Hofestädt.
    Harnstoffzykluserkrankungen und Organoazidämien: Aufnahme in das erweiterte Neugeborenen-Screening?
    Pädiatrie hautnah, 17( 8): S19-S22, 2005.

2004

  • N. Kolchanov and R. Hofestädt R. (eds.)
    Bioinformatics of Genome Regulation and Structure
    Kluewer Academic Publishers , 2004

  • Hofestädt R. und Lenhof H.-P. (Hrsg.)
    Schwerpunktthema Molekulare Bioinformatik
    ti Sonderausgabe, Oldenbourg-Verlag, 1, 2004

  • Hofestädt R. und Lenhof H.-P.
    Molekulare Bioinformatik
    ti Sonderausgabe, Oldenbourg-Verlag, 1, 2004, 3-4

  • R. Hofestädt, M. Chen
    Metabolic Pathway Prediction/Alignment
    Proceedings of the Fourth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS'2004), July 25-30, 2004, Novosibirsk, Russia, Vol. 2: 68-72.

  • M. Chen, S. Lin and R. Hofestädt.
    STCDB: Signal Transduction Classification Database
    Nucleic Acids Research, 2004, 32(1): D456-D458

  • M. Chen and R. Hofestädt
    Web-based Information Retrieval System for the Prediction of Metabolic Pathways
    IEEE Transactions on Nanobioscience, 2004, 3(3): 192-199

  • M. Chen and R. Hofestädt
    PathAligner: Metabolic Pathway Retrieval and Alignment
    Applied Bioinformatics, 2004, 3(4): 241-252

  • D. W. Lorenz and J. Kix,
    The Benefits of Notebooks in Applied Bioinformatics Education
    In Proceedings: EDMEDIA2004. World Conference on Educational Multimedia, Hypermedia & Telecommunications.
    Lugano, Schweiz. July 2004.

2003

  • J. Köhler, S. Philippi and M. Lange
    SEMEDA: Ontology Based Semantic Integration of Biological Databases
    Bioinformatics, Volume 19(18), pp. 2420-2427

  • M. Chen and R. Hofestädt
    Quantitative Petri net model of gene regulated metabolic networks in the cell.
    In Silico Biology. 3, 0030 (2003)

  • A. Freier, R. Hofestädt and M. Lange
    Integrative analysis of gene networks using dynamic process pattern modelling.
    Bioinformatics of Genome Regulation and Structure. R. Hofestaedt, N. Kolchanov (eds.), Kluwer Academic Publishers.

  • D. W. Lorenz and A. Rüegg
    GenBiLL: Generic Biochemical Learning Laboratories.
    In Proceedings: ED-MEDIA 2003 - World Conference on Educational Multimedia, Hypermedia & Telecommunications. Honolulu, USA, June 2003.

  • D. W. Lorenz and J. Kix
    Improving Bioinformatics Education Through Mobile Technology.
    In Proceedings:  EUNIS 2003. Conference on European University Information Systems. Amsterdam, Netherlands. July 2003.

  • A. Freier, R. Hofestädt and M. Lange
    iUDB: An object-oriented system for modelling, integration and analysis of
    gene controlled metabolic networks. In Silico Biology, 3 (0019), IOS Press, 2003.

2002

  • R. Hofestädt
    Bioinformatics.
    Yearbook of Medical Informatics. Schattauer 2002, 581-583

  • J. Collado-Vides und R. Hofestädt (Herausgeber)
    Gene Regulation and Metabolism - Post-Genomic Computational Approaches
    Cambridge, MA: MIT Press, 2002.

  • A. Freier, R. Hofestädt, M. Lange and U. Scholz
    Information Fusion and Metabolic Network Control
    In J. Collado-Vides and R. Hofestädt, Herausgeber, Gene Regulation and Metabolism - Post-Genomic Computational Approaches. Cambridge, MA: MIT Press, 2002.

  • R. Hofestädt und T. Töpel
    Case-based Support of Information Retrieval and Analysis of Molecular Data.
    In Proceedings of The 15th IEEE Symposium on Computer-Based Medical Systems (CBMS 2002), Maribor, Slovenia, June 4-7, 2002, S. 129-133, 2002.

  • T. Töpel und R. Hofestädt
    Architecture for Information Retrieval and Analysis of Integrated Molecular Data.
    In Medizinische Genetik, Band 14, Nr. 3, S. 315, 2002.

  • T. Töpel, U. Mischke, D. Scheible, F. Trefz und R. Hofestädt
    RAMEDIS: Vernetzte Forschung am Beispiel angeborener Stoffwechselerkrankungen.
    In Informatik, Biometrie und Epidemiologie in Medizin und Biologie, Band 33, Nr. 2-3, S. 79-80, 2002.

  • T. Töpel, U. Scholz, U. Mischke, D. Scheible, R. Hofestädt, F. Trefz
    Supporting genotype-phenotype correlation with the rare metabolic diseases database Ramedis
    In Silico Biology, 2, 0036, 2002.
    Online Journal: http://www.bioinfo.de/isb/2002/02/0036/

  • A. Freier, R. Hofestädt, M. Lange, U. Scholz und A. Stephanik
    BioDataServer: A SQL-based service for the online integration of life science data.
    In Silico Biology, 2(0005), 2002.
    Online Journal: http://www.bioinfo.de/isb/2002/02/0005
  • Hofestädt R., Kolchanov N. und Reinitz J.:
    Information and Simulation Systems for the Analysis of Gene Regulation and Metablic Pathways. In Silico Biology, 2, 0005, 2002. 35-36

  • Freier, A., Hofestädt, R. and Lange, M. (2002) IIUDB: An Object-oriented System for Modelling, Integration and Analysis of Gene Controlled Metabolic Networks, Proceedings of the Third International Conference on Bioinformatics of Genome Regulation and Structure (BGRS’02) Novosibirsk, Russia July 14-20, vol. 2, pp.123-125, ICG Novosibirsk.

  • Hofestädt, R. und Schnee R. : Studien und Forschungsführer Bioinformatik. Spektrum Akademischer Verlag, Heidelberg, 2002

  • Hofestädt R. und Töpel T.: Case-based Support of Information Retrieval and Analysis of Molecular Data. In Proceedings of The 15th IEEE Symposium on Computer-Based Medical Systems (CBMS 2002), Maribor, Slovenia, 129-133, 2002.

  • M. Chen, A. Freier, J. Köhler, A. Rüegg, The Biology Petri Net Markup Language. In: Jörg Desel, Mathias Weske (Hrsg.), Lecture Notes in Informatics - proceedings of Promise'2002, Oct. 9-11, Potsdam, Germany, Vol. 21: 150-161

  • M. Chen, Modelling and Simulation of Metabolic Networks: Petri Nets Approach and Perspective, in the proceeding of "ESM 2002, 16th European Simulation Multiconference" , 2002, June 3-5, Darmstadt, Germany, 441-444

  • Döhr S. et al: Modeling of gene regulatory networks for genotype-phenotype information, Progress Report German Human Genome Project, BMBF 2002, 68-69

  • Lorenz, D.: Das generische Labor.  In Beck U., Sommer W. (ed.), Proceeding of  "LEARNTEC 2002, 10. Europäischer Kongress und Fachmesse für Bildungs- und Informationstechnologie", 595-601,  Karsruhe, Germany, 2002

2001

  • A. Freier, R. Hofestädt und M. Lange.
    The electronical infrastructure for the analysis of metabolic networks.
    In Abstracts' Book of the Workshop on CORBA and XML: Towards a Bioinformatics Integrated Network Evironment, NETTAB 2001 - Network Tools and Applications in Biology, S. 38-43, 2001.
  • R. Hofestädt, M. Lange und U. Scholz.
    Molecular Information Fusion for Metabolic Networks.
    In G.X. Xue, Y.B. Xue, Z.H. Xu, R. Holmes, G. Hammond und H.A. Lim, Herausgeber, Gene Families: Studies of DNA, RNA, Enzymes and Proteins, S. 221-232. Singapore et al: World Scientific Press, 2001.
  • R. Hofestädt, J. Reinitz, N. Kolchanov.
    Information and Simulation Systems for the Analysis of Gene Regulation and Metabolic Pathways
    Report No. 313 of the Dagstuhl-Seminar No. 01261, Schloss Dagstuhl, 24. 6. - 29. 6. 2001.
    http://www.dagstuhl.de/01261/, zipped PS, zipped PDF
  • R. Kauert, T. Töpel, U. Scholz und R. Hofestädt.
    Information System for the Support of Research, Diagnosis and Therapy of Inborn Metabolic Diseases.
    In MedInfo 2001: Proceedings of the 10th World Congress on Health and Medical Informatics, London, September 2 - 5, 2001, S. 353-356. Amsterdam: IOS Press, 2001.
  • A. Stephanik, R. Hofestädt, M. Lange und A. Freier.
    Metabolic Information Control System.
    In Proceedings of the World Multiconference on Systemics, Cybernetics and Informatics (SCI 2001), Orlando, Florida, USA, July 22-25, 2001.
  • U. Mischke, U. Scholz, T. Töpel, D. Scheible, R. Hofestädt und F. K. Trefz.
    RAMEDIS - Rare Metabolic Diseases Publishing Tool for Genotype-Phenotype Correlation.
    In MedInfo 2001: Proceedings of the 10th World Congress on Health and Medical Informatics, London, September 2 - 5, 2001, S. 970-974. Amsterdam: IOS Press, 2001.

2000

  • A. Freier, R. Hofestädt, M. Lange und U. Scholz.
    An integrated architecture for modelling and simulation of metabolic networks.
    In Proceedings of the BIOTECHNOLOGY 2000, S. 210-211. DECHEMA e.V., 2000.
  • J.M. Hills, J.C. Thomason, H. Davis, J. Köhler und E. Millett
    Exploratory behaviour of barnacle larvae in field conditions.
    Biofouling, Volume 16 (2-4), pp 171 - 179, 2000.
  • R. Hofestädt.
    Electronical infrastructure for the detection of inborn errors.
    In Proceedings of the Second International Conference on Bioinformatics of Genome Regulation and Structure (BRGS2000), ICG Novisibirsk, Vol.1, 212-213, 2000.
  • R. Hofestädt, K. Lautenbach und M. Lange, Herausgeber.
    Modellierung und Simulation Metabolischer Netzwerke: DFG-Workshop im Rahmen des DFG-Schwerpunktes Informatikmethoden zur Analyse und Interpretation großer genomischer Datenmengen, Magdeburg, 19. - 20. Mai 2000, Preprint Nr. 10. Fakultät für Informatik, Universität Magdeburg, 2000.
  • R. Hofestädt, U. Mischke und U. Scholz.
    Knowledge acquisition, management and representation for the diagnostic support in human inborn errors of metabolism.
    In A. Hasman, B. Blobel, J. Dudeck, R. Engelbrecht, G. Gell und H.-U. Prokosch, Herausgeber, Medical Infobahn for Europe: Proceedings of MIE2000 and GMDS2000, Hannover, August 27 - September 1, S. 857-862. Amsterdam et al: IOS Press, 2000.
  • R. Hofestädt, K.-P. Pleißner und A. Stephanik, Herausgeber.
    Informationssysteme in der Biotechnologie. Fakultät für Informatik, Universität Magdeburg, 2000.
  • J. Köhler, M. Lange, R. Hofestädt und S. Schulze-Kremer.
    Logical and Semantic Database Integration.
    In BIBE 2000: IEEE International Symposium on Bio-Informatic & Biomedical Engineering, Washington, D.C., U.S.A., November 8-10, S. 77-80. IEEE Computer Society, 2000.

1999

  • Collado-Vides, J.; Hofestädt, R.; Mavrovouniotis, M.; Michal, G.:
    Modeling and simulation of gene regulation and metabolic pathways.
    Bio Systems, Vol. 49, No 1, pp. 79-82, 1999.
  • Freier, A.; Hofestädt, R.; Lange, M.; Scholz, U.:
    MARGBench - An Approach for Integration, Modeling and Animation of Metabolic Networks
    In Giegerich, R.; Hofestädt, R.; Lengauer, T.; Mewes, W.; Schomburg, D.; Vingron, M.; Wingender, E. (Eds.): Proceedings of the German Conference on Bioinformatics (GCB '99), Hannover, October 4th - 6th, pp. 190-194, 1999.
  • Hofestädt, R.; Lange, M.; Scholz, U.:
    Molecular Information Fusion for Metabolic Networks
    Courses of The First International Bioinformatics Summer School (IBSS '99), Magdeburg, September 5th -10th, 1999.
  • Hofestädt, R.; Mischke, U.; Prüß, M.; Scholz, U.:
    Metabolic Drug Pointing and Information Processing.
    Medical Informatics Europe, Vol. 68, pp. 12-15, 1999.
  • Hofestädt, R. (Ed.):
    Bioinformatik 2000 - Forschungsführer Informatik in den Biowissenschaften. Berlin: BIOCOM, 1999.
  • Hofestädt, R.:
    Bioinformatik 2000 - Von der Molekularen Biologie zum Metabolic Engineering.
    Informatik Spektrum, Vol. 22, No 5, pp. 385-390, 1999.
  • Hofestädt, R.:
    Das Bioinformatik-Dilemma.
    Laborjournal, Vol. 99, No 10, pp. 12-13, 1999.
  • J. Köhler, P.D. Hansen und M. Wahl
    Colonization patterns at the substratum-water interface: How does surface microtopography influence recruitment patterns of sessile organisms?
    Biofouling, Volume 14 (3), pp. 237- 248, 1999

1998

  • J. Collado-Vides, R. Hofestädt, M. Mavrovouniotis, G. Michal (ed.).
    Modelling and Simulation of Gene and Cell Regulation and Metabolic Pathways.
    Schloss Dagstuhl, International Conference and Research Center for Computer Science, Seminar No. 98251, Report No. 215, 1998.
  • A. Freier, M. Höding, R. Hofestädt, M. Lange, U. Scholz.
    Molecular Database Integration: Analysis of Metabolic Network Control.
    In: Proceedings of the First International Conference on Bioinformatics of Genome Regulation and Structure (BGRS'98) Novosibirsk - Altai Mountains, Russia August 24-31, Volume 1, pp 86-89, ICG Novosibirsk, 1998.
  • M. Höding, R. Hofestädt, G. Saake, U. Scholz.
    Scheme Derivation for WWW Information Sources and their Integration with Databases in Bioinformatics
    In: W. Litwin, T. Morzy, G. Vossen (eds.), Second East-European Symposium on Advances in Databases and Information Systems (ADBIS'98), September 8th -11th, 1998, Poznan, Poland, LNCS No.1475, Springer Publishing, Berlin, pp 296-304, 1998.
  • R. Hofestädt (ed.).
    Molekulare Bioinformatik: Workshop der GI'98 Jahrestagung
    in Series: Medizinische Informatik und Bioinformatik, Shaker Publishing, Aachen, 1998.
  • R. Hofestädt.
    An Integrative Molecular Information System.
    In: Proceedings of The 9th World Congress on Medical Informatics, Editors: B. Cesnik, A. McCray, J. Scherrer, ISO Press, pp 361-365, 1998.
  • R. Hofestädt, M. Prüß, U. Scholz, H. Urban.
    Molekulare Bioinformatik- Molekulare Informationssysteme zur Erkennung von angeborenen Stoffwechselerkrankungen.
    Magdeburger Wissenschaftsjournal 3(1):29-40, 1998.
    See also Preprint No. 9 (German) of Faculty for CS, Otto-von-Guericke University Magdeburg
  • R. Hofestädt, U. Scholz.
    Information Processing for the Analysis of Metabolic Pathways and Inborn Errors.
    BioSystems, 47, pp 91-102, 1998.
  • R. Hofestädt, S. Thelen.
    Quantitative Modeling of Biochemical Networks.
    In Silico Biology 1(1), pp 39-53, IOS Press, 1998.
    Available online via URL: http://www.bioinfo.de/isb/1998/01/0006/,

1997

  • R. Hofestädt.
    Computer Science and Biology.
    Biosystems, 43, 1997, pp 69-71.
  • R. Hofestädt.
    Herausforderungen des elektronischen Krankenhausmanagements.
    In: C. Steigner (ed.), Arbeitsplatz-Rechensysteme, Fölbach Publishing, 1997, pp 285-292.
  • R. Hofestädt.
    Algorithms for the Microscopic and Macroscopic Analysis of Metabolic Processes (Diseases).
    In: Proceedings European Congress on Intelligent Techniques and Soft Computing, Publishing Mainz, Vol. 3, pp 2293-2297
  • R. Hofestädt, T. Lengauer, M. Löffler, D. Schomburg (ed.).
    Bioinformatics.
    LNCS, 1278, Springer Publishing, 1997.
  • R. Hofestädt, H. Lim (ed.).
    Molecular Bioinformatics: Sequence Analysis - The Human Genome Project.
    Shaker Publishing, Aachen 1997.

1996

  • J. Collado-Vides, R. Hofestädt, M. Löffler, M. Mavrovouniotis (ed.).
    Modelling and Simulation of Gene and Cell Regulation.
    Dagstuhl-Seminar-Report, 130, 1996.
  • R. Hofestädt, J. Collado-Vides, M. Mavrovouniotis.
    Modelling and Simulation of Metabolic Pathways, Gene Regulation and Cell Differentiation.
    BioEssays, 18, 1996, 333-335.
  • R. Hofestädt et al.
    Integrative Database Analysis for the Detection of Inborn Errors.
    In: J. Brender et al. (ed.): Medical Informatics Europe '96, IOS Press, 1996, 542-546.
  • R. Hofestädt et al..
    Simulation of load balancing with cellular automata.
    Simulation Practice and Theory, 4, 1996, 81-96.
  • R. Hofestädt, T. Lengauer, M. Löffler (ed.).
    Informatik in den Biowissenschaften.
    it+ti Sonderausgabe, Oldenbourg-Verlag, 5, 1996.
  • H. Herre, R. Hofestädt, F. Trefz (ed.).
    Computerunterstützte Erkennung von Stoffwechselerkrankungen.
    Informatik-Berichte, 9, University of Leipzig, 1996.
  • R. Hofestädt, T. Lengauer, M. Löffler, D. Schomburg (ed.).
    Computer Science and Biology - Proceedings of the German Conference on Bioinformatics.
    IMISE Report, 1, University of Leipzig, 1996.

1995

  • R. Hofestädt, M. Löffler, K. Möller (ed.).
    Modellierung des Immunsystems.
    Informatik Bericht, Universität Bonn, 88, 1995.
  • R. Hofestädt.
    Computer Science, Supercomputing and Biology - Bioinformatics.
    Journal EUROSIM - Simulation News Europe, 13, 7-15, 1995.
  • R. Hofestädt, F. Meinecke.
    Interactive Modelling and Simulation of Biochemical Networks.
    Computers in Biology and Medicine, 25, 321-334, 1995.
  • R. Hofestädt.
    Metabolic Engineering.
    In: Sydow A. (ed.), International IMACS-Symposium on Systems Analysis and Simulation, Elsevier, 1995 , 321-326 (See also SAMS, 18, 1995, 99-102).
  • R. Hofestädt.
    A Rule Based System for the Detection of Metabolic Diseases.
    In: Greenes R., Peterson H. und Protti D. (ed.), Proceedings of the Eighth World Congress on Medical Informatics, North-Holland, 1995, 994-999.
  • R. Hofestädt, X. Huang.
    Automaton-Based Load Balancing Simulation in a Workstation Cluster.
    Proceedings APPT'95 International Workshop on Advanced Parallel Processing Technologies, Publishing House of Electronics Industry, Beijing 1995, 344-347.
  • R. Hofestädt et al (ed.).
    Artificial Life.
    GMD-Studien, 271, St. Augustin, 1995

1994

  • R. Hofestädt
    A Petri Net Application to Model Metabolic Processes.
    In Barahona P., Veloso M. und Bryant J. (ed.): Proceedings 12th International Congress of the European for Medical Informatics, Lissabon 1994, 115-120.
    Extended Version: Journal of Systems Analysis Modelling Simulation, 16, 1994, 113-122.
  • R. Hofestädt, U. Hörkens.
    CASS - Simulation Shell for Cellular Automata.
    Journal of Systems Analysis Modelling Simulation, 14, 1, 1994, 1-15.
  • R. Hofestädt.
    Detection and Animation of Metabolic Bottlenecks.
    In Lim H. (ed.): Proceedings Third International Conference on Bioinformatics and Genome Research, Talahassee 1994, World Scientific, 331-340.
  • R. Hofestädt.
    Modellierung und Simulation molekulargenetischer Prozesse.
    In Kampe G., Zeitz M. (ed.): Proceedings ASIM 1994 Simulationstechnik, Vieweg Publishing, Stuttgart 1994, 1-8.
  • K.-E. Großpietsch, R. Hofestädt, C. Steigner (Hrsg.).
    Parallele Datenverarbeitung in Cluster-Workstations.
    Informatik Berichte, University of Koblenz, Heft 9, 1994.
  • D. Beerbohm, S. Bresken, R. Hofestädt, X. Huang.
    Automatengesteuertes skalierbares Verfahren zum Lastausgleich.
    In Flieger R., Grebe R. (ed.): Parallele Datenverarbeitung aktuell, IOS Press, London 1994, 100-108.
  • R. Hofestädt.
    Computer-Aided Metabolic Engineering.
    it+ti Nachrichten, Heft 6, 1994, 66-70.
  • U. Ashauer, R. Hofestädt.
    Ein wissensbasierter Ansatz zur Diagnose genetisch verursachter Stoffwechselkrankheiten.
    In Kunath H. et al. (ed.): Proceedings 39. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie (GMDS), MMV Medizin Publishing Munich, 1994, 115-119.
  • D. Beerbohm, S. Bresken, R. Hofestädt, X. Huang.
    Dynamic load balancing based on the theory of cellular automata.
    In Dekker L., Smit W. und Zuidervaart J. (ed.): Proceedings Conference on Massively Parallel Processing, Elsevier, Amsterdam 1994, 235-242.

1993

  • R. Hofestädt, F. Krückeberg, T. Lengauer (ed.).
    Informatik in den Biowissenschaften.
    Informatik Aktuell, Springer Publishing, Heidelberg, 1993.
  • D. Beerbohm, R. Hofestädt, X. Huang.
    Dynamischer Lastausgleich mit Zellularautomaten.
    In Proceedings of the PARS 1993, PARS Notes No. 12, 1993, 92-101.
  • R. Hofestädt.
    Grammatical Formalization of Metabolic Processes.
    In L. Hunter, Searls D. and Shavlik J. (ed.): Proceedings First International Conference of Intelligent Systems for Molecular Biology, MIT/AAAI Press California, Washington D.C. 1993, 181-189.
  • R. Hofestädt.
    Formale Sprachen zur Beschreibung von Zellstoffwechselprozessen.
    In Pöppl S., Lipinski H.-G. und Mansky T. (ed.): Medizinische Informatik, MMV Medizin Publishing, Munich 1993, 245-249.
  • R. Hofestädt.
    Modelling molecular counters with stochastic cellular grammars.
    Informatik, Biometrie und Epidemiologie in Medizin und Biologie, 4, 1993, 169-177.
  • R. Hofestädt.
    A Simulation Shell to Model Metabolic Pathways.
    In Journal of Systems Analysis Modelling Simulation, Vol. 11, 1993, 253-262.
  • R. Hofestädt, K. Lautenbach, M. Löffler (ed.).
    Modellierung der Zelldifferenzierung.
    Informatik Berichte, University of Koblenz, 11, 1993
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